Baked Pumpkin Oatmeal Cups
Easy Baked Pumpkin Oatmeal Cups are perfect for busy mornings! These healthy pumpkin breakfast cups are naturally gluten-free and meal-prep friendly.
You know those mornings when you’re rushing out the door and breakfast feels like an impossible dream? I’ve been there more times than I’d like to admit. That’s exactly why I fell head over heels for these Baked Pumpkin Oatmeal Cups.
They’re like having a warm hug waiting in your fridge, ready to fuel your busiest days. I started making these Pumpkin Oatmeal Muffins last fall when my mornings became absolutely chaotic, and honestly, they’ve become my secret weapon for surviving the breakfast rush.
What makes these Healthy Pumpkin Breakfast Cups so brilliant is their incredible simplicity. There’s no complicated mixing method, no fancy equipment, and definitely no gluten-containing ingredients to worry about. Just wholesome oats, cozy pumpkin, and warming spices that fill your kitchen with the most heavenly aroma.
Table of Contents
Ingredients
| Ingredient | Amount |
|---|---|
| Milk (dairy or nondairy) | 1โ cups (320ml) |
| Large eggs | 2 |
| Pure maple syrup | ยฝ cup (120ml) |
| Fresh or canned pumpkin puree | โ cup (150g) |
| Old-fashioned whole rolled oats | 3 cups (255g) |
| Baking powder | 1 teaspoon |
| Pumpkin pie spice | 1 teaspoon |
| Ground cinnamon | 1 teaspoon |
| Pure vanilla extract | ยฝ teaspoon |
| Salt | ยผ teaspoon |
| Optional add-ins (choose one or mix): | |
| Chocolate chips | 1 cup (180g) |
| Chopped pecans or walnuts | 1 cup (100g) |
| Dried cranberries | 1 cup (120g) |
| Optional topping: | |
| Coarse sugar | For sprinkling |

Instructions
Step 1: Preheat your oven to 350ยฐF (177ยฐC). Give a 12-count muffin pan a generous coating of nonstick sprayโdon’t be shy here! If you’re thinking about using paper liners, I’d actually recommend skipping them for these Baked Pumpkin Oatmeal Cups since they tend to stick a bit. Trust me on this one.
Step 2: Grab a large mixing bowl and whisk together the milk, eggs, maple syrup, pumpkin puree, oats, baking powder, pumpkin pie spice, cinnamon, vanilla, and salt. Keep whisking until everything’s beautifully combinedโthe mixture will look thinner than traditional muffin batter, and that’s exactly what you want. If you’re adding chocolate chips, nuts, or cranberries, gently fold them in now with a spoon or silicone spatula.
Step 3: Spoon the batter evenly into your prepared muffin cups, filling each one right to the top. Make sure you’re getting a good mix of both the liquid and the chunky oat mixture in each cupโthis ensures every Pumpkin Oatmeal Muffin bakes up perfectly. Want a little extra crunch and sparkle? Sprinkle some coarse sugar over the tops before baking.
Step 4: Slide the pan into your preheated oven and bake for 28โ30 minutes. You’ll know your Healthy Pumpkin Breakfast Cups are done when the edges turn a lovely golden brown and the tops look set when you gently touch them. If the tops start browning too quickly, just loosely tent some aluminum foil over the pan.
Step 5: Let the Baked Oatmeal Cups cool in the pan for 5โ10 minutes before serving. This cooling time helps them firm up and makes them easier to remove. Serve them warm, or let them cool completely for meal prep.
Substitutions
Need a different sweetener? You can swap the maple syrup with honey or agave nectar in these Baked Pumpkin Oatmeal Cups. Keep the measurement the same, though honey will add a slightly different flavor profile that’s equally delicious. Some readers have even used mashed banana (about 1 ripe banana) for a naturally sweet, lower-sugar version.
Dealing with egg allergies? These Pumpkin Oatmeal Muffins work beautifully with flax eggs. Mix 2 tablespoons ground flaxseed with 6 tablespoons water, let it sit for 5 minutes until gel-like, then use it in place of the regular eggs. The texture will be slightly denser but still completely satisfying.
No pumpkin pie spice on hand? Make your own by mixing ยฝ teaspoon cinnamon, ยผ teaspoon ground ginger, โ teaspoon ground nutmeg, and โ teaspoon ground cloves. This blend works perfectly in these Healthy Pumpkin Breakfast Cups and tastes just as cozy as the store-bought version.
Using quick oats instead? Stick with old-fashioned rolled oats if possible for the best texture in these Baked Pumpkin Oats. Quick oats can make the cups a bit mushy and won’t give you that hearty, satisfying bite we’re after.

Troubleshooting
Cups falling apart when you remove them? This usually means they needed a bit more baking time or the pan wasn’t greased well enough. Next time, spray that pan generously and let the Baked Pumpkin Oatmeal Cups cool for the full 10 minutesโpatience really pays off here. According to research on oat-based baked goods, the beta-glucan fiber in oats needs adequate cooling time to set properly.
Tops browning too fast? Every oven runs a little differently, and some run hotter than the dial suggests. If your Pumpkin Oatmeal Muffins are browning quickly on top but still seem undercooked in the center, reduce your oven temperature to 325ยฐF and add a few extra minutes to the baking time. That foil tent trick I mentioned earlier is your friend here too!
Texture too dense or gummy? Make sure you’re measuring your oats correctlyโuse the spoon-and-level method rather than scooping directly with the measuring cup. Too many oats will make your Healthy Pumpkin Breakfast Cups heavy and dense instead of tender and fluffy as a cloud on a crisp autumn morning.
Liquid pooling at the bottom? Give your batter a good stir right before spooning it into the cups. The oats tend to settle, so that quick stir ensures each muffin cup gets an even distribution of liquid and solids for perfectly baked Baked Pumpkin Oats.
Storage & Meal Prep
Store your cooled Baked Pumpkin Oatmeal Cups in an airtight container in the refrigerator for up to one week. They actually taste incredible cold straight from the fridgeโperfect for those mornings when you literally have zero time. You can also reheat them in the microwave for 20โ30 seconds if you prefer them warm.
Wellโฆ here’s my favorite meal prep trick: these Pumpkin Oatmeal Muffins freeze beautifully for up to three months! Let them cool completely, then wrap each one individually in plastic wrap and store them all in a freezer-safe bag. Pop one in the microwave for about 60 seconds straight from frozen, and you’ve got a hot breakfast that rivals any coffee shop offering.
Serving Suggestions
These Healthy Pumpkin Breakfast Cups are incredibly versatile and delicious on their own, but a little extra love never hurt anyone! Drizzle them with almond butter or peanut butter for added protein and richness. A dollop of Greek yogurt on top adds creaminess and turns them into a more substantial breakfast that’ll keep you full until lunch.
For a special weekend breakfast or holiday brunch (they’re absolutely perfect for Thanksgiving morning!), serve them warm with a pat of butter melting on top and an extra drizzle of maple syrup. Kids love these Baked Pumpkin Oatmeal Cups with a handful of fresh berries on the side, and honestly, the combination of warm pumpkin spices with cool, tart berries is simply magical.
Variations
Chocolate Lover’s Version: Fold in ยพ cup chocolate chips and top each Pumpkin Oatmeal Muffin with a few extra chips before baking. The melty chocolate pockets make these taste like a treat while still being genuinely nourishing. My kids request these every single week!
Dairy-Free & Vegan: These Baked Pumpkin Oats adapt beautifully to plant-based diets. Use your favorite nondairy milk, replace eggs with flax eggs (as mentioned in the substitutions), and skip any butter garnishes. They’re just as delicious and nobody will ever know they’re vegan.
Apple-Pumpkin Hybrid: Add ยฝ cup finely diced apple along with (or instead of) the other add-ins for a delightful twist on these Healthy Pumpkin Breakfast Cups. The apple pieces add little bursts of sweetness and extra moisture that complement the pumpkin beautifully.
Protein-Packed Version: Stir in 2โ3 tablespoons of your favorite protein powder (vanilla or unflavored works best) to transform these Baked Pumpkin Oatmeal Cups into a post-workout powerhouse. You might need to add an extra tablespoon or two of milk to compensate for the protein powder’s absorbency.
Nut-Free for School: Simply omit the nuts and use sunflower seed butter drizzled on top after baking instead. These are perfect for packing in lunchboxes since they’re naturally gluten-free, nut-free, and totally mess-free!
Baked Pumpkin Oatmeal Cups FAQs
Can I make these Baked Pumpkin Oatmeal Cups ahead for the week?
Absolutely! That’s actually their superpower. Bake a batch on Sunday evening, store them in the fridge, and you’ve got grab-and-go breakfasts sorted for the entire week. They hold up beautifully and might even taste better after a day or two as the flavors meld together.
How do I prevent the oatmeal cups from sticking to the pan?
The secret is generous greasingโdon’t be stingy with that nonstick spray! Coat every corner and crevice of those muffin cups. I’ve found that skipping paper liners altogether and going straight spray-to-pan works best for these Pumpkin Oatmeal Muffins since they tend to cling to paper no matter what.
What’s the best way to reheat these breakfast cups?
Microwave them for 20โ30 seconds if they’re refrigerated, or about 60 seconds if they’re frozen solid. You can also warm them in a 300ยฐF oven for about 10 minutes if you’re reheating several at once. Man, oh man, they smell incredible warming upโjust like fall is happening right in your kitchen!
Why are my Healthy Pumpkin Breakfast Cups too wet in the middle?
This usually means they need a few more minutes in the oven. Since ovens vary, yours might run a bit cooler than mine. Try adding 2โ3 extra minutes to the baking time, and make sure you’re seeing those lightly browned edges before pulling them out.
Can I use pumpkin pie filling instead of pure pumpkin?
Stick with pure pumpkin puree for these Baked Pumpkin Oatsโnot the pre-spiced pie filling. Pie filling contains added sugars and spices that will throw off the recipe’s balance. Pure puree gives you complete control over sweetness and spice levels.

More Pumpkin Recipes You’ll Love
If these Baked Pumpkin Oatmeal Cups have you craving more cozy pumpkin goodness, you’ve got to try my irresistibly spiced gluten-free pumpkin pie bars. They’re perfect for holiday gatherings and disappear faster than you’d believe!
For a showstopping dessert that happens to be both gluten-free and dairy-free, check out this silky-smooth oat milk pumpkin pie. It’s become my go-to for Thanksgiving because it accommodates so many dietary needs without sacrificing an ounce of flavor.

Baked Pumpkin Oatmeal Cups
Equipment
- 12-count muffin pan
- Large mixing bowl
- Whisk
- Measuring cups and spoons
- Spoon or silicone spatula
- Nonstick spray
Ingredients
- 1โ cups milk dairy or nondairy, 320ml
- 2 large eggs
- ยฝ cup pure maple syrup 120ml
- โ cup pumpkin puree fresh or canned, 150g
- 3 cups old-fashioned whole rolled oats 255g, use certified gluten-free
- 1 teaspoon baking powder
- 1 teaspoon pumpkin pie spice store-bought or homemade
- 1 teaspoon ground cinnamon
- ยฝ teaspoon pure vanilla extract
- ยผ teaspoon salt
Optional Add-ins (choose one or mix)
- 1 cup chocolate chips 180g
- 1 cup chopped pecans or walnuts 100g
- 1 cup dried cranberries 120g
Optional Topping
- coarse sugar for sprinkling
Instructions
- Preheat your oven to 350ยฐF (177ยฐC). Give a 12-count muffin pan a generous coating of nonstick sprayโdon’t be shy here! If you’re thinking about using paper liners, I’d actually recommend skipping them for these Baked Pumpkin Oatmeal Cups since they tend to stick a bit. Trust me on this one.
- Grab a large mixing bowl and whisk together the milk, eggs, maple syrup, pumpkin puree, oats, baking powder, pumpkin pie spice, cinnamon, vanilla, and salt. Keep whisking until everything’s beautifully combinedโthe mixture will look thinner than traditional muffin batter, and that’s exactly what you want. If you’re adding chocolate chips, nuts, or cranberries, gently fold them in now with a spoon or silicone spatula.
- Spoon the batter evenly into your prepared muffin cups, filling each one right to the top. Make sure you’re getting a good mix of both the liquid and the chunky oat mixture in each cupโthis ensures every Pumpkin Oatmeal Muffin bakes up perfectly. Want a little extra crunch and sparkle? Sprinkle some coarse sugar over the tops before baking.
- Slide the pan into your preheated oven and bake for 28โ30 minutes. You’ll know your Healthy Pumpkin Breakfast Cups are done when the edges turn a lovely golden brown and the tops look set when you gently touch them. If the tops start browning too quickly, just loosely tent some aluminum foil over the pan.
- Let the Baked Oatmeal Cups cool in the pan for 5โ10 minutes before serving. This cooling time helps them firm up and makes them easier to remove. Serve them warm, or let them cool completely for meal prep.
