Gluten-Free Seedy Quinoa Breakfast Cookies
Easy gluten-free seedy quinoa breakfast cookies loaded with hemp, pumpkin, and chia seeds. Perfect for busy mornings—make 12 in under 30 minutes!
Mornings in our house used to be chaos—everyone grabbing whatever they could find, rushing out the door. Then I discovered something life-changing: gluten-free seedy quinoa breakfast cookies that actually taste like a treat instead of punishment. These little powerhouses changed everything about how we approach breakfast.
Here’s the thing about healthy quinoa cookies: they don’t feel like you’re forcing yourself to eat something “good for you.” They’re genuinely delicious, loaded with hemp seeds, pumpkin seeds, and chia seeds that make every bite feel intentional and nourishing. The cooked quinoa creates this surprisingly wonderful texture that’s almost melt-in-your-mouth, while the tahini binds everything together beautifully.
Table of Contents

Gluten-Free Seedy Quinoa Breakfast Cookies
Equipment
- Medium mixing bowl
- Baking sheet
- Parchment paper
- Wire rack
- Measuring cups
- Measuring spoons
- Spoon or spatula
- Cookie Scoop (1 1/2 Tbsp)
Ingredients
Base Ingredients
- ⅔ cup Cooked quinoa measured after cooking, about 124g
- ½ cup Rolled oats ensure gluten-free as needed
Seeds
- ¼ cup Raw pumpkin seeds unsalted
- 2 tablespoons Hemp seeds hulled
- 2 tablespoons Chia seeds
Wet Ingredients & Binders
- ½ cup Creamy tahini drippy texture works best
- ¼ cup Maple syrup
- ¼ teaspoon Baking soda
- ¼ teaspoon Sea salt
Optional Add-In
- ¼ cup Semisweet chocolate chips optional, ensure dairy-free as needed
Instructions
- Step 1: Prepare Your Quinoa (If Needed) If you don’t already have cooked quinoa on hand, prepare it now using your Instant Pot or stovetop method. You’ll need about 1 scant 1/4 cup of uncooked quinoa, which yields roughly 2/3 cup (124 grams) after cooking—that’s your perfect amount for this gluten-free quinoa cookies recipe.
- Step 2: Set Up Your Workspace Preheat your oven to 350 degrees Fahrenheit (176 degrees Celsius) and line a baking sheet with parchment paper. Set everything aside so you’re ready to go the moment your dough comes together, and you’ll notice how organized this whole process feels.
- Step 3: Build Your Seedy Mixture To a medium mixing bowl, add the 2/3 cup cooked quinoa, rolled oats, pumpkin seeds, hemp seeds, and chia seeds. Stir everything together until well combined—this is where your healthy quinoa cookies base truly takes shape, with all those wonderful seeds distributed evenly throughout.
- Step 4: Bind with Creamy Ingredients Now add the tahini, maple syrup, baking soda, sea salt, and optional chocolate chips to your seed mixture. Stir thoroughly until everything is fully incorporated and the dough has that gorgeous, slightly sticky consistency—as smooth and cohesive as freshly mixed clay.
- Step 5: Shape and Bake Scoop the dough using a 1 1/2 tablespoon measure, placing each cookie close together on your prepared baking sheet since they won’t expand much. Gently flatten each one with the palm of your hand, then bake for 14 to 18 minutes until the edges turn a beautiful golden brown. This is when your kitchen will smell absolutely incredible.
- Step 6: Cool with Care Let the seedy quinoa breakfast cookies cool on the baking sheet for 5 to 10 minutes before carefully transferring them to a wire rack. They’ll firm up nicely as they cool completely, transforming from slightly soft to perfectly chewy—the texture really is something special.
Notes
Ingredients

| Ingredient | Amount |
|---|---|
| Cooked quinoa (measured after cooking) | 2/3 cup |
| Rolled oats (gluten-free) | 1/2 cup |
| Raw pumpkin seeds (unsalted) | 1/4 cup |
| Hemp seeds (hulled) | 2 tablespoons |
| Chia seeds | 2 tablespoons |
| Creamy tahini | 1/2 cup |
| Maple syrup | 1/4 cup |
| Baking soda | 1/4 teaspoon |
| Sea salt | 1/4 teaspoon |
| Semisweet chocolate chips (optional) | 1/4 cup |
Instructions
Step 1: Prepare Your Quinoa (If Needed)
If you don’t already have cooked quinoa on hand, prepare it now using your Instant Pot or stovetop method. You’ll need about 1 scant 1/4 cup of uncooked quinoa, which yields roughly 2/3 cup (124 grams) after cooking—that’s your perfect amount for this gluten-free quinoa cookies recipe.
Step 2: Set Up Your Workspace
Preheat your oven to 350 degrees Fahrenheit (176 degrees Celsius) and line a baking sheet with parchment paper. Set everything aside so you’re ready to go the moment your dough comes together, and you’ll notice how organized this whole process feels.
Step 3: Build Your Seedy Mixture
To a medium mixing bowl, add the 2/3 cup cooked quinoa, rolled oats, pumpkin seeds, hemp seeds, and chia seeds. Stir everything together until well combined—this is where your healthy quinoa cookies base truly takes shape, with all those wonderful seeds distributed evenly throughout.
Step 4: Bind with Creamy Ingredients

Now add the tahini, maple syrup, baking soda, sea salt, and optional chocolate chips to your seed mixture. Stir thoroughly until everything is fully incorporated and the dough has that gorgeous, slightly sticky consistency—as smooth and cohesive as freshly mixed clay.
Step 5: Shape and Bake
Scoop the dough using a 1 1/2 tablespoon measure, placing each cookie close together on your prepared baking sheet since they won’t expand much. Gently flatten each one with the palm of your hand, then bake for 14 to 18 minutes until the edges turn a beautiful golden brown. This is when your kitchen will smell absolutely incredible.
Step 6: Cool with Care
Let the seedy quinoa breakfast cookies cool on the baking sheet for 5 to 10 minutes before carefully transferring them to a wire rack. They’ll firm up nicely as they cool completely, transforming from slightly soft to perfectly chewy—the texture really is something special.
Substitutions for Your Kitchen
Using Different Seeds in Your Healthy Quinoa Cookies
You can absolutely swap out the hemp and chia seeds for sunflower seeds, flax seeds, or sesame seeds at a 1:1 ratio. The texture and flavor will shift slightly, but your gluten-free quinoa cookies will still be delicious and packed with nutrition—just explore what your family enjoys most.
Almond Butter or Sunflower Seed Butter Instead of Tahini
If tahini isn’t in your pantry, creamy almond or sunflower seed butter works beautifully as a substitute. Use the same 1/2 cup amount and you’ll get a slightly different flavor profile while maintaining that essential binding power in your vegan quinoa cookies recipe.
Honey or Coconut Nectar for Sweetness
Maple syrup is wonderful, but honey or coconut nectar work equally well at a 1:1 ratio. Keep in mind that honey adds a subtle floral note while coconut nectar brings mild caramel undertones to your quinoa cookie recipe.
Dairy-Free Chocolate or Carob Chips
If you prefer avoiding chocolate entirely, swap the optional chips for dairy-free varieties or add a handful of unsweetened carob chips instead. You could even skip them completely and add dried cranberries or raisins for tartness instead.
Looking for more wholesome morning ideas? Explore our complete gluten-free breakfast collection for additional inspiration, or discover easy dairy-free dessert ideas when you want something sweet. You might also love our beginner-friendly baking tips to build confidence in your gluten-free kitchen.
Troubleshooting Tips
Cookies Are Too Dry
If your finished seedy quinoa breakfast cookies feel crumbly or overly dense, you likely need a touch more tahini or maple syrup in your next batch. These sticky ingredients are crucial for binding, so don’t skimp—they’re what creates that wonderful chewy texture everyone craves.
Dough Won’t Hold Together
Cooked quinoa varies in moisture content, so if your dough feels too loose, add rolled oats by the tablespoon until it reaches a moldable consistency. You might also need slightly more tahini, which acts as the primary glue holding everything together beautifully.
Cookies Burned on the Edges
Check your oven temperature with an oven thermometer, as some ovens run hot and can scorch the edges quickly. Consider moving your baking sheet to a lower rack or reducing bake time by 2 minutes on your next attempt.
Uneven Baking
Flatten your cookies more uniformly before baking, ensuring they’re roughly the same thickness throughout. Rotate your baking sheet halfway through baking for more even browning across all your gluten-free quinoa cookies.
Storage and Meal Prep
Room Temperature Storage
Your seedy quinoa breakfast cookies keep beautifully in an airtight container at room temperature for 2 to 3 days. This makes them perfect for grabbing on weekday mornings when time is tight and everyone’s rushing out the door.
Refrigerator and Freezer Options
For longer freshness, store your healthy quinoa cookies in the refrigerator for up to 4 to 5 days in an airtight container. They also freeze wonderfully for 1 month or longer, so you can batch-make several trays during meal-prep time and enjoy them throughout the month ahead.
Serving Suggestions and Pairings
As a Grab-and-Go Breakfast
These vegan quinoa cookies are designed to be eaten straight from the container while heading out the door. Pair them with a strong cup of coffee or herbal tea for a quick morning combo that actually sticks with you until lunch.
With Yogurt and Granola
Crumble one cookie over a bowl of creamy yogurt and your favorite granola for a more substantial breakfast moment. Add fresh berries on top and you’ve transformed a simple cookie into a full breakfast experience that feels intentional.
Paired with Fresh Fruit
Serve your gluten-free quinoa cookies alongside fresh apple slices, berries, or banana for natural sweetness and complete nutrition. The tartness of berries especially balances the richness of the tahini beautifully.
Variations for Every Lifestyle
Kid-Friendly Seedy Cookies
Well, if your little ones find whole seeds a bit too chewy, pulse the pumpkin and hemp seeds into smaller pieces before mixing them in. This creates a smoother texture while keeping all the nutritional benefits kids need for growing bodies.
Extra Chocolate Version
Increase the chocolate chips to 1/2 cup for a more decadent treat that still delivers protein and seeds. You could even drizzle melted chocolate over cooled cookies for an extra indulgent touch.
Boosted Protein Cookies
Stir in 2 to 3 tablespoons of vanilla protein powder to your dry ingredients for an even more substantial vegan quinoa cookies option. This works especially well if you’re making these for post-workout snacking or serious morning nutrition.
Spiced Quinoa Cookie Variation
Man, oh man, adding 1/2 teaspoon cinnamon and a pinch of nutmeg transforms these into cozy spiced cookies perfect for fall breakfasts. The warm spices pair beautifully with the nutty flavors of seeds and tahini for something truly special.
FAQs About Seedy Quinoa Breakfast Cookies
Can I make these cookies without cooked quinoa?
Technically you could, but the quinoa is essential to the texture and adds significant protein and amino acids. If you don’t have quinoa on hand, it’s worth cooking a small batch since it only takes 15 minutes and transforms these cookies completely.
Are these vegan quinoa cookies safe for nut allergies?
Yes! Since these healthy quinoa cookies use tahini instead of almond butter, they’re naturally nut-free. Just verify that all your seeds and chocolate are produced in nut-free facilities if that’s a concern for your household.
How much protein is in each seedy quinoa breakfast cookie?
Each cookie delivers approximately 4 to 5 grams of protein from the quinoa, seeds, tahini, and oats combined. For a gluten-free breakfast option, that’s genuinely substantial and keeps hunger at bay until lunch.
Can I eat these cookies while breastfeeding?
Absolutely! Hemp and chia seeds are both galactagogues—foods traditionally linked to supporting milk supply—making these vegan quinoa cookies particularly nourishing for nursing parents. They’re also packed with omega-3 fatty acids important for baby’s brain development.
What’s the best way to keep cookies from sticking together?
Place parchment paper or wax paper between each layer when storing your seedy quinoa breakfast cookies in containers. This prevents them from becoming one giant cookie clump and makes grabbing individual cookies on busy mornings much easier.
Can I use raw quinoa instead of cooked?
No, you really need cooked quinoa here since raw grains require cooking to become digestible and appetizing. The cooked version also provides the necessary moisture for binding, making it essential to your gluten-free quinoa cookies’ success.
Final Thoughts
Creating breakfast that feels nourishing rather than obligatory changes everything about how your morning goes. These gluten-free seedy quinoa breakfast cookies prove that wholesome eating doesn’t require complicated recipes or hard-to-find ingredients—just thoughtful combinations of things your body actually needs.
Whether you’re fueling a busy household, meal-prepping for the week, or discovering new ways to include quinoa in your routine, these cookies deliver on every front. They’re beautiful proof that breakfast can be quick, nutritious, and genuinely delicious all at once.
For more on the nutritional benefits of seeds and quinoa, check out authoritative nutrition research supporting why these ingredients matter for sustained morning energy.
